Institute of Animal Science
Volcani Center, P.O.B. 6, Bet-Dagan, 50250 Israel
Tel: +972-8-9484425; Fax: +972-8-9475075
TraceHaplotyper Example Data Set:
Four examples of trace files containing SNPs and heterozygous for deletions are included with their output.
TraceHaplotyper results can be viewed for each file. Click file name to download ABI trace file.
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example1.abi: Analysis for one SNP site (A or G) following a deletion of 8 bases at
btTRA16 gene View results This individual is homozygous for this SNP.
Haplotype1 is deletion and "A".
Haplotype2 is insertion and "A".
The expected sequence of this locus is:expected file: GCAGCCTCACTCCTTCTTCTTCCCTAGCACACGTAGGTGATAGATGACCACTCGGCCAAA
GAAATCAGTGGTGTCCTCAAATGTCACCTTCAGCCGGTCCACCTCAGCAGGTGGCACTGG
GAAGGTGTAAGCTGAACAGTCAAGGGAAACAGATTTATCTTTTCCCACCTGCCAGCCCCA
GCTCAGATACATCCACTGCG{CTGGGTCA}CCC[A/G]CACACTGTTGGTCCCTGAGAAG
CTCTCACACAGAACAGACTGTCGTGAGCCCATTTTACAGGTGAACCAGTGGAGACCTAGA
GGCCACTTGCCCAAGGTCACAGGCCGGGGCCCACAGCTTTCAGAGGCACAGATCATCCCA
CCCAGCGGCTGAAACAGGATATCTGAAGCGAGTTGTTGTCCTCAGGGTAAAAATCCACAA
TCTTGCTAAGAGCCTCACTCCCCAGAGAACCTGTAGCAGAGAAAGAGGCAGTGAGACCAG
CGAGCCCTCTCTAATCCCCTACTTTCCAGGGTTTTCCAGTACCTTCCAGGCGGCCCTGGC
GACTGGAGAAGCCCCCCTGGAACTGGATCTGCAGC
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example2.abi: Analysis for one SNP site (A or G) following a deletion of 8 bases at
btTRA16 gene View results This individual is heterozygous for this SNP.
Haplotype1 is deletion and "A".
Haplotype2 is insertion and "G".
The expected sequence of this locus is:expected file: GCAGCCTCACTCCTTCTTCTTCCCTAGCACACGTAGGTGATAGATGACCACTCGGCCAAA
GAAATCAGTGGTGTCCTCAAATGTCACCTTCAGCCGGTCCACCTCAGCAGGTGGCACTGG
GAAGGTGTAAGCTGAACAGTCAAGGGAAACAGATTTATCTTTTCCCACCTGCCAGCCCCA
GCTCAGATACATCCACTGCG{CTGGGTCA}CCC[A/G]CACACTGTTGGTCCCTGAGAAG
CTCTCACACAGAACAGACTGTCGTGAGCCCATTTTACAGGTGAACCAGTGGAGACCTAGA
GGCCACTTGCCCAAGGTCACAGGCCGGGGCCCACAGCTTTCAGAGGCACAGATCATCCCA
CCCAGCGGCTGAAACAGGATATCTGAAGCGAGTTGTTGTCCTCAGGGTAAAAATCCACAA
TCTTGCTAAGAGCCTCACTCCCCAGAGAACCTGTAGCAGAGAAAGAGGCAGTGAGACCAG
CGAGCCCTCTCTAATCCCCTACTTTCCAGGGTTTTCCAGTACCTTCCAGGCGGCCCTGGC
GACTGGAGAAGCCCCCCTGGAACTGGATCTGCAGC
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example3.abi Analysis for two SNP sites (C or A; T or C) following a deletion of a single base at
btGRAMD3 gene View results This individual is heterozygous for one of these SNPs.
Haplotype1 is deletion; "C" and "C".
Haplotype2 is insertion; "C" and "T".
The expected sequence of this locus is:expected file: GCAAACATGCACTTCCACAAACTGTTTCTAGATGTCCCCACGGAGGAACCTTTGAGACAA
AGTAAGTTCTGACCTGGTTGACTTTGAAA{A}GATGCTAATTGGTTTTGGGGGTGAAAGA
GCCTGGGGACTGAATCACCAAGGGGAATAGGTTTCTGAAAGTCATGATGTGACAGTAATG
CTGACCTCACTCAGCTCTCACCCAGCA[C/A]CTTGAGAGATAAGAGAGGAGAATGGGGA
ACTGACTCCCTCCATGTGATACAGAGT[T/C]ATCCCAGAGGTTTCCAGAATGTCCTCGC
CT
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example4.abi Analysis for two SNP sites (C or A; T or C) following a deletion of a single base at
btGRAMD3 gene View results This individual is heterozygous for both SNPs.
Haplotype1 is deletion; "C" and "C".
Haplotype2 is insertion; "A" and "T".
The expected sequence of this locus is:expected file: GCAAACATGCACTTCCACAAACTGTTTCTAGATGTCCCCACGGAGGAACCTTTGAGACAA
AGTAAGTTCTGACCTGGTTGACTTTGAAA{A}GATGCTAATTGGTTTTGGGGGTGAAAGA
GCCTGGGGACTGAATCACCAAGGGGAATAGGTTTCTGAAAGTCATGATGTGACAGTAATG
CTGACCTCACTCAGCTCTCACCCAGCA[C/A]CTTGAGAGATAAGAGAGGAGAATGGGGA
ACTGACTCCCTCCATGTGATACAGAGT[T/C]ATCCCAGAGGTTTCCAGAATGTCCTCGC
CT
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Reference sequences related to these examples can be dowloaded
here.
Volcani
Center / Institute
of Animal Science