This program genotypes a tracefile that results from sequencing of two chromosomes, which one of them having a deletion preceding a SNP. In such case the phase of these markers can be determined.
Example Data Set
Source code


Submit a file with an indel for base-calling and genotyping (Phred compatible, e.g.: .ab1, .abi, .scf formats)

Submit the expected sequence of the allele with the insert - use brackets to mark in text format the {indel} and the sites of SNPs [allele1/allele2]
Only one indel and biallelic SNPs are allowed

Eyal Seroussi Ph. D.

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